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Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2
Nicola Prezza
,
Francesco Vezzi
,
Max Käller
,
Alberto Policriti
2016-01-01
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DOI
URL
Type
Journal article
Publication
BMC BIOINFORMATICS
Bisulfite; BWT; DNA methylation; NGS; Succinct hashing; CpG Islands; DNA; Data Compression; Genome
Human; Genomics; High-Throughput Nucleotide Sequencing; Humans; Sequence Analysis
DNA; Sulfites; DNA Methylation; Epigenomics; Software; Applied Mathematics; Structural Biology; Biochemistry; Molecular Biology; Computer Science Applications1707 Computer Vision and Pattern Recognition
Related
Wheeler Languages
LZ77 Computation Based on the Run-Length Encoded BWT
From LZ77 to the run-length encoded burrows-wheeler transform, and back
Computing LZ77 in Run-Compressed Space
Average Linear Time and Compressed Space Construction of the Burrows-Wheeler Transform
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